Tag: research square vs biorxiv

  • eLife BioRxiv Model: Review After Posting Changes Peer Review

    eLife biorxiv review works in reverse order to a conventional journal: the paper is posted publicly on bioRxiv first, and eLife’s editors and reviewers evaluate it only after it is already visible to the world, publishing the result as a “Reviewed Preprint” rather than issuing an accept-or-reject verdict.

    A Reviewed Preprint is a bioRxiv or medRxiv manuscript that has been through eLife’s editorial and peer-review process and is published, alongside public reviews and an eLife Assessment, without a binary publication decision attached to it.

    What Is eLife’s Preprint-Only Review Model?

    eLife requires every submission to already exist as a preprint, typically on bioRxiv or medRxiv, before its editors will consider it. Editors — themselves active researchers — screen incoming preprints and select a subset for full review. In 2023, eLife formalised this into its Publish, Review, Curate model, removing the accept/reject gate entirely: any preprint that goes through full review is published as a Reviewed Preprint, regardless of how favourable the assessment turns out to be.

    This inverts the journal’s traditional role. Instead of deciding whether a paper reaches readers, eLife’s reviewers now decide how a paper readers can already see should be interpreted, through a public review and a standardised eLife Assessment describing the significance of the findings and the strength of the evidence.

    How Does eLife Review a Preprint Already on bioRxiv?

    The workflow eLife uses is consultative rather than adversarial, and it produces a single, consolidated verdict rather than several disconnected reviewer reports. In practice it runs through six stages:

    1. The author posts the manuscript to bioRxiv or medRxiv as a preprint.
    2. The author submits the same preprint to eLife for consideration.
    3. A reviewing editor screens the preprint and decides whether to send it for full review; many submissions are declined at this stage.
    4. Two or three external reviewers and the editor hold a consultative discussion to produce one consolidated set of comments rather than separate, sometimes-conflicting reports, with authorship and contribution details carried over from the original preprint.
    5. eLife publishes the preprint together with the public reviews and an eLife Assessment as a Reviewed Preprint.
    6. The author chooses whether, and when, to revise the work, resubmit it for further review, or declare it a Version of Record.

    This builds on a service eLife had already run since May 2020, when it launched “Preprint Review” to bring peer review to manuscripts already on bioRxiv, and on a submission pathway available since 2017 that let authors upload to bioRxiv while submitting to eLife in parallel.

    How Does This Differ From Traditional Pre-Publication Peer Review?

    The core difference is sequencing: in a conventional journal, review happens before the public ever sees the manuscript, and the outcome of that review is a gatekeeping decision. In eLife’s model, the manuscript is already public, and review adds an evaluative layer on top of it rather than deciding whether it exists at all.

    Feature eLife’s model Traditional pre-publication review
    Timing Publish first, review second Review first, publish only if accepted
    Outcome No accept/reject; all reviewed work is published as a Reviewed Preprint Binary accept/reject decision
    Transparency Reviews and eLife Assessment published openly Reviewer identities and comments usually confidential
    Author control Author decides when to revise or declare a Version of Record Author must satisfy editor/reviewers to be published at all
    Unit of evaluation Article-level assessment Journal-level acceptance, often read as a proxy for quality

    The trade-off is real, not just structural. Because Clarivate’s Journal Impact Factor methodology requires an indexed journal to publish only papers that editors have formally validated as acceptable, eLife’s decision to publish every reviewed preprint — regardless of the assessment’s verdict — led Clarivate to discontinue eLife’s Journal Impact Factor from its 2025 Journal Citation Reports release, ending a metric that had stood at 6.4.

    Where Does bioRxiv Fit Among Preprint Servers?

    bioRxiv (pronounced “bio-archive”) is a free preprint server for the life sciences, operated by openRxiv, a nonprofit dedicated to advancing scientific communication. It sits within a wider ecosystem of subject-specific preprint servers, several of which are frequently confused with one another or with journal-run review platforms such as Research Square’s In Review.

    Server Field Screening model
    bioRxiv Life sciences Basic screening only; operated by nonprofit openRxiv
    medRxiv Health sciences / clinical Additional screening for clinical risk; also run by openRxiv
    arXiv Physics, maths, computer science Moderated but not peer-reviewed; run by Cornell University
    Research Square Multidisciplinary Preprint posting plus optional “In Review” integrated peer review, tied to Springer Nature journals
    SSRN Social sciences, economics, law Basic screening; owned by Elsevier
    ChemRxiv Chemistry Basic screening; run by chemical societies

    The distinction that matters for the “biorxiv or arxiv” question is disciplinary scope, not rigour: arXiv predates bioRxiv by more than two decades and serves physical sciences, while bioRxiv (launched 2013) was purpose-built for biology. Neither performs peer review itself — that is precisely the gap eLife’s model was designed to fill for bioRxiv content.

    What Does This Mean for Research Administrators and Institutions?

    For research administration offices, the practical question is no longer whether a preprint has been reviewed, but whether assessment, promotion, and funding-reporting processes recognise a Reviewed Preprint as equivalent to a conventional accepted article. That question is not yet uniformly answered.

    • The US National Institutes of Health has permitted preprints to be cited in grant applications and biosketches since 2017, establishing precedent that funders can recognise unpublished-but-posted work.
    • eLife reports that a growing number of funders now explicitly recognise Reviewed Preprints, rather than only the eventual Version of Record, in research assessment.
    • Institutions signed to the San Francisco Declaration on Research Assessment (DORA) already commit to evaluating research on its own merits rather than journal-level metrics — directly compatible with article-level eLife Assessments, since Clarivate no longer supplies a journal Impact Factor to fall back on.
    • Research administrators handling REF-style exercises, tenure dossiers, or grant reports need local guidance on whether the Reviewed Preprint, the eLife Assessment, or the Version of Record is the citable unit — under the 2023 model, all three can exist for one piece of work, each with its own DOI in a single version log.

    A data point often missing from commentary on the model: a 2019 eLife study by Abdill and Blekhman tracking bioRxiv preprint outcomes found eLife published almost as many bioRxiv preprints (394) in 2018 as any other single journal — over a third of its 1,172 articles that year — years before the 2023 model made this the default route.

    Common Questions About eLife and bioRxiv

    Is eLife a preprint?

    No. eLife is a journal, not a preprint server. It reviews manuscripts that authors have already posted as preprints on bioRxiv or medRxiv and publishes the result as a Reviewed Preprint — the preprint plus public reviews and an eLife Assessment, distinct from the original unreviewed posting.

    What is bioRxiv used for?

    bioRxiv is used to share life-sciences research immediately, before or independent of journal peer review. Researchers post manuscripts to establish priority, gather early feedback, and make findings available while formal review — at eLife or elsewhere — is still under way, sometimes for months.

    Why did eLife lose its impact factor?

    Clarivate discontinued eLife’s Journal Impact Factor because eLife now publishes every peer-reviewed submission as a Reviewed Preprint regardless of the review outcome, rather than issuing conventional accept/reject decisions. Clarivate’s indexing rules require journals to publish only editorially validated papers, so eLife’s model fell outside that requirement from the 2025 Journal Citation Reports release.

    Is eLife a high-impact journal?

    eLife’s citation performance was historically strong — its last Journal Impact Factor was 6.4 — but it no longer carries a Clarivate-assigned Impact Factor. Its standing is now judged through article-level eLife Assessments and public reviews rather than a single journal-wide citation metric.

    As more funders and institutions formalise how they treat Reviewed Preprints, Public Reviews, and eLife Assessments in research assessment, eLife’s model looks less like an isolated experiment and more like an early test case for peer review as a layer added on top of open preprints, rather than a gate placed in front of them. Research offices that decide this now — before it becomes a routine dossier question — will have a real advantage over those that wait for a funder mandate to force the issue.

  • Research Square vs bioRxiv: Ownership & Fees

    Research Square vs bioRxiv is, at its core, a nonprofit-versus-commercial question: Research Square is a preprint platform owned by the for-profit publisher Springer Nature, while bioRxiv and medRxiv are nonprofit servers now governed by openRxiv, an independent 501(c)(3) that took over from Cold Spring Harbor Laboratory (CSHL) in March 2025. Both are free for authors to use, but the ownership structure behind each one shapes fees, licensing control, data governance and long-term archival continuity in ways that matter for anyone advising authors on where to post.

    A preprint server is an online platform where researchers deposit manuscripts before, or independently of, formal peer review. Research Square, bioRxiv and medRxiv are three of the most widely used servers in the life, health and biomedical sciences, and authors are increasingly asked to choose between them without understanding what sits behind each brand.

    What Is the Core Difference Between Research Square and bioRxiv?

    The core difference is legal ownership and mission accountability, not scope or screening rigour. Research Square traces to American Journal Experts (AJE); Springer Nature took a minority stake in the Research Square platform in 2018, became majority owner in 2020, and completed full acquisition of Research Square Company in 2022. It is, today, a wholly commercial subsidiary of a for-profit publishing group.

    bioRxiv was founded in 2013 by John Inglis and Richard Sever at CSHL, a nonprofit research institution. medRxiv followed in 2019 as a partnership between CSHL, Yale University and BMJ. In March 2025, governance of both servers passed from CSHL to openRxiv, a newly formed independent nonprofit whose stated mission is “creating opportunities for sharing, discovering, and advancing preprints in the life and health sciences” — with a dedicated board and a Scientific and Medical Advisory Board of researchers overseeing policy.

    Feature Research Square bioRxiv / medRxiv (via openRxiv)
    Governing entity Springer Nature (for-profit publisher) openRxiv (independent nonprofit, 501(c)(3))
    Platform launched 2016, under Research Square Company bioRxiv 2013; medRxiv 2019
    Ownership shift Minority stake 2018 → majority 2020 → full acquisition 2022 Transitioned from CSHL to independent nonprofit, March 2025
    Author posting fee Free Free
    Sustainability model Cross-subsidised by Springer Nature publishing and AJE author-services revenue Philanthropic and institutional grants (Chan Zuckerberg Initiative, Sergey Brin Family Foundation, Robert Lourie Foundation, partner universities)
    Default licence CC-BY 4.0 required for all preprints Author’s choice: CC0, CC-BY, CC-BY-NC, CC-BY-ND, CC-BY-NC-ND, or no reuse without permission
    Journal integration In Review, tied to 1,000+ participating journals No equivalent journal-submission integration
    Bulk text-and-data-mining access No published bulk TDM programme; access via Crossref metadata and the site Monthly XML/PDF corpus via a requester-pays AWS S3 bucket, plus a public metadata API
    Long-term preservation Portico Portico

    Who Pays, and How Is Each Platform Funded?

    Neither model charges authors to post a preprint — that much is identical. What differs is where the money to run the platform comes from, and what that implies about future incentives. Research Square’s operating costs are absorbed by Springer Nature’s commercial publishing business and by AJE’s paid author-services division (editing, translation and related products), which Research Square continues to cross-sell alongside free preprint posting.

    openRxiv, by contrast, depends on renewable philanthropic and institutional grants rather than a parent company’s revenue. Its principal funders include the Chan Zuckerberg Initiative, the Sergey Brin Family Foundation, the Robert Lourie Foundation and a consortium of supporting universities including Caltech, MIT, Stanford, Yale and the University of Washington. That is a genuine trade-off, not a straightforward win for either side:

    • Research Square’s commercial backing gives it predictable, revenue-linked funding, but ties its long-term direction to Springer Nature’s corporate strategy.
    • openRxiv’s nonprofit funding is mission-locked by governance structure, but depends on grant renewal cycles rather than a guaranteed revenue stream.

    Who Owns and Controls Author Data?

    Ownership of the underlying manuscript stays with authors on both platforms — this is not a copyright grab by either side. The meaningful difference is licensing control and third-party data access. Research Square requires every posted preprint to carry a CC-BY 4.0 licence, which is the most permissive open licence and maximises reuse rights for readers, but leaves authors no choice in the matter.

    bioRxiv and medRxiv give authors a menu of licence options — CC0, CC-BY, CC-BY-NC, CC-BY-ND, CC-BY-NC-ND, or a “no reuse without permission” setting — and authors can change the licence on an existing preprint after posting. That is more author control, though funders that mandate CC-BY (a growing norm, including under several cOAlition S-aligned policies) require authors to actively select it rather than receiving it by default.

    The two models also diverge sharply on bulk data access. openRxiv publishes a full monthly XML/PDF text-and-data-mining corpus through a requester-pays AWS S3 bucket, alongside a public metadata API — an open-infrastructure commitment consistent with nonprofit, grant-funded governance. Research Square does not publish an equivalent bulk TDM feed; third-party discovery of Research Square content runs through Crossref DOI metadata and the platform’s own search interface rather than a dedicated open corpus.

    What Long-Term Archival Guarantees Does Each Model Offer?

    Both platforms use the same third-party preservation service: Portico provides perpetual-access archiving for preprints posted to Research Square, bioRxiv and medRxiv alike, so the archive itself is not where the two models diverge.

    The real difference is organisational continuity risk. A commercial platform’s archival commitments are ultimately corporate policy that could change with ownership or strategy; a nonprofit platform’s commitments are set by a mission-bound board, though it carries the separate risk of grant-funding renewal. Advising authors on a multi-decade preprint record means treating “who governs the archive” as distinct from “where is the archive stored.”

    Common Questions About Research Square and bioRxiv

    Is bioRxiv reputable?

    Yes. bioRxiv is widely cited across molecular and cell biology, screens submissions for plagiarism and non-scientific content, and is now governed by openRxiv, an independent nonprofit with a Scientific and Medical Advisory Board. Its reputation rests on community adoption and transparent, nonprofit governance rather than commercial incentives.

    Does bioRxiv count as published?

    No. A bioRxiv or medRxiv preprint is not peer-reviewed and does not constitute formal publication. The ICMJE treats preprints as legitimate scholarly communication, not duplicate publication, but funders and REF-style assessment exercises generally still require the peer-reviewed version for compliance credit.

    Is bioRxiv a preprint?

    bioRxiv is not itself a preprint — it is the server that hosts preprints. A preprint is the individual manuscript version posted before or independent of peer review; bioRxiv is the nonprofit infrastructure, now under openRxiv, that makes that posting possible for life-science research.

    What are the alternatives to bioRxiv?

    Alternatives include medRxiv for clinical and public-health research, Research Square for multidisciplinary and journal-integrated posting, and repository-style options such as arXiv, the Open Science Framework, Figshare and Zenodo. The right choice depends on discipline, human-subjects status and whether journal-integrated posting matters.

    What This Means for Authors and Research Administrators

    For most authors, the nonprofit-versus-commercial distinction will not change whether posting is free — it usually is, on both models. It should change how administrators frame the advice they give:

    • Explain that Research Square’s mandatory CC-BY licence maximises reuse but removes licensing choice, while bioRxiv/medRxiv give authors more control over which licence applies.
    • Flag that researchers doing large-scale corpus analysis will find far richer bulk access through openRxiv’s TDM feeds than through Research Square.
    • Note that archival preservation (Portico) is equivalent across models — the open question is who controls future platform policy, not the archive.
    • Treat commercial ownership as a disclosure point, not a disqualifier: Springer Nature’s backing gives Research Square’s In Review workflow journal-integration value a nonprofit model does not replicate.

    As more research administration offices build formal preprint guidance into their researcher-facing documentation, the originating business model behind a server deserves the same disclosure as its discipline coverage or screening depth. Authors are entitled to know not just where their manuscript will sit, but who ultimately governs the platform holding it — a nonprofit board answerable to a research mission, or a commercial parent answerable to shareholders.

    Last updated: 3 July 2026.